STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ69778.1Outer membrane transport energization protein ExbB; TC 2.C.1.1.1. (207 aa)    
Predicted Functional Partners:
AAZ69777.1
Conserved hypothetical protein.
 
  
 0.956
AAZ69779.1
Conserved hypothetical protein.
 
    0.956
AAZ72594.1
Cobaltochelatase CobN subunit.
 
  
 0.846
AAZ69774.1
Cobaltochelatase CobN subunit.
 
  
 0.837
AAZ70712.1
Cobaltochelatase CobN subunit.
 
  
 0.771
AAZ71720.1
Conserved hypothetical protein.
 
  
 0.703
AAZ71073.1
Cobaltochelatase CobN subunit.
  
     0.672
AAZ70736.1
Cobaltochelatase CobN subunit.
 
     0.664
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
   
 0.539
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
  
 0.534
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.