STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ69812.1Conserved hypothetical protein. (263 aa)    
Predicted Functional Partners:
AAZ69813.1
Conserved hypothetical protein.
 
  
 0.997
pylB
Biotin synthase; Catalyzes the isomerization of L-lysine to (2R,3R)-3- methylornithine via a radical-based mechanism, a step in the biosynthesis pathway of pyrrolysine.
 
   
 0.926
pylS
Pyrrolysyl-tRNA synthetase; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
 
   
 0.875
mtmB1
Monomethylamine:corrinoid methyltransferase; Catalyzes the transfer of the methyl group from monomethylamine to the corrinoid cofactor of MtmC.
 
   
 0.731
ABF82161.3
Monomethylamine methyltransferase.
 
   
 0.731
AAZ69651.1
Conserved hypothetical protein.
 
   
 0.696
AAZ69775.1
Conserved hypothetical protein.
  
     0.684
AAZ70458.1
Trimethylamine permease.
  
     0.666
rnp2
Ribonuclease P protein subunit Rpp14; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family.
      
 0.648
AAZ69816.1
Conserved hypothetical protein.
  
   
 0.647
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.