STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ69928.1tRNA-archaeosine synthase. (626 aa)    
Predicted Functional Partners:
AAZ70147.1
Conserved hypothetical protein.
 
     0.790
AAZ70061.1
Phosphoserine phosphatase.
 
   
 0.763
AAZ69182.1
Conserved hypothetical protein.
  
     0.724
AAZ70392.1
Replication factor-A protein 1.
  
     0.722
AAZ70470.1
Conserved hypothetical protein.
  
     0.718
AAZ71242.1
Transcriptional regulator, XRE family.
  
     0.705
AAZ72343.1
Conserved hypothetical protein.
  
     0.705
AAZ70391.1
Conserved hypothetical protein.
  
     0.703
AAZ69277.1
Conserved hypothetical protein.
  
     0.701
AAZ70960.1
Conserved hypothetical protein.
  
     0.687
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.