Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AAZ70203.1Putative regulatory protein. (506 aa)    
Predicted Functional Partners:
AAZ70202.1
Conserved hypothetical protein.
 
     0.895
AAZ72206.1
Conserved hypothetical protein.
 
     0.818
AAZ71554.1
Conserved hypothetical protein.
 
  
 0.542
AAZ70872.1
Conserved hypothetical cytosolic protein.
 
  
 0.529
AAZ71131.1
Conserved hypothetical protein.
 
  
 0.510
AAZ71909.1
Conserved hypothetical protein.
 
     0.436
AAZ72136.1
Pantothenate kinase.
   
    0.407
AAZ71132.1
BatA; Bacteroides aerotolerance operon.
 
  
 0.403
AAZ69459.1
Conserved hypothetical protein.
  
     0.401
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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