STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ70717.1Protoporphyrin IX magnesium-chelatase. (688 aa)    
Predicted Functional Partners:
AAZ71132.1
BatA; Bacteroides aerotolerance operon.
  
 
 0.978
AAZ70712.1
Cobaltochelatase CobN subunit.
 
  
 0.919
AAZ69774.1
Cobaltochelatase CobN subunit.
 
  
 0.888
AAZ72594.1
Cobaltochelatase CobN subunit.
 
  
 0.887
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
  
 0.751
AAZ70736.1
Cobaltochelatase CobN subunit.
  
     0.745
AAZ71073.1
Cobaltochelatase CobN subunit.
  
     0.744
AAZ70716.1
Conserved hypothetical protein.
       0.705
AAZ69299.1
4-hydroxybenzoate octaprenyltransferase.
 
  
 0.648
AAZ70803.1
Geranylgeranylglycerol-phosphate geranylgeranyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.643
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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