STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ70915.1Oligopeptide ABC transporter, ATP-binding protein. (312 aa)    
Predicted Functional Partners:
AAZ70302.1
Dipeptide ABC transporter, ATP-binding protein.
 
    
0.894
AAZ72438.1
Dipeptide ABC transporter, permease.
  
 0.869
AAZ70911.1
Oligopeptide ABC transporter, permease protein.
  
 0.863
AAZ70914.1
Oligopeptide ABC transporter, ATP-binding protein.
 
  
0.862
AAZ72537.1
Oligopeptide ABC transporter, permease.
  
 0.856
AAZ70559.1
Oligopeptide ABC transporter, permease protein.
  
 0.838
AAZ70912.1
Oligopeptide ABC transporter, permease protein.
 
  
 0.829
AAZ69622.1
Oligopeptide ABC transporter, permease protein.
  
 0.821
AAZ70245.1
Oligopeptide ABC transporter, permease protein.
  
 0.814
AAZ70964.1
ABC transporter, permease protein.
  
 0.792
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.