STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ70944.1Hypothetical protein. (276 aa)    
Predicted Functional Partners:
AAZ70884.1
Putative cytochrome P450.
   
 0.880
atpC
A1AO H+ ATPase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 
 0.862
atpF
A1AO H+ ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 
 0.854
rpl6
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.851
AAZ69251.1
Long-chain fatty-acid-CoA ligase.
  
 0.843
AAZ71721.1
Long-chain fatty-acid-CoA ligase.
  
 0.843
AAZ70943.1
Glycosyltransferase.
       0.797
AAZ69374.1
A1AO H+ ATPase subunit I; Belongs to the V-ATPase 116 kDa subunit family.
 
 
 
 0.782
AAZ70337.1
DNA helicase RepD.
 
 
 0.768
AAZ69852.1
DNA-directed RNA polymerase, subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.764
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.