Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AAZ70946.1Transcriptional regulator, ArsR family. (174 aa)    
Predicted Functional Partners:
AAZ70947.1
Hypothetical protein.
       0.781
AAZ72346.1
SPFH domain, Band 7 family protein.
       0.647
AAZ69928.1
tRNA-archaeosine synthase.
  
     0.547
AAZ70470.1
Conserved hypothetical protein.
  
     0.530
AAZ71799.1
Conserved hypothetical protein.
  
     0.524
AAZ72343.1
Conserved hypothetical protein.
  
     0.486
AAZ69687.1
Conserved hypothetical protein.
  
     0.457
atpF
A1AO H+ ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.452
AAZ70570.1
Conserved hypothetical protein.
  
     0.445
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
 
     0.444
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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