STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ71372.1Secreted metalloprotease. (543 aa)    
Predicted Functional Partners:
AAZ70577.1
Conserved hypothetical protein.
  
     0.549
AAZ71829.1
Conserved hypothetical protein.
  
     0.535
AAZ70933.1
Hypothetical protein.
  
     0.511
AAZ69280.1
Conserved hypothetical protein.
  
     0.432
AAZ69500.1
Conserved hypothetical protein.
  
     0.432
AAZ70663.1
Conserved hypothetical protein.
  
     0.432
AAZ70731.1
Alpha-amylase.
  
     0.432
AAZ69066.1
Transposase, IS4 family.
  
     0.423
AAZ71134.1
Transposase.
  
     0.422
AAZ71501.1
Transposase.
  
     0.422
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.