STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ72089.1Conserved hypothetical protein. (414 aa)    
Predicted Functional Partners:
truD
Putative tRNA pseudouridine synthase D; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
     0.766
AAZ69210.1
Conserved hypothetical protein.
  
     0.709
AAZ70636.1
Conserved hypothetical protein.
  
     0.709
AAZ69729.1
Conserved hypothetical protein.
  
     0.704
AAZ72023.1
Conserved hypothetical protein.
  
     0.700
AAZ71853.1
Conserved hypothetical protein.
  
     0.698
AAZ71133.1
Hypothetical protein.
  
     0.685
AAZ71700.1
Hypothetical protein.
  
     0.675
AAZ70094.1
Hypothetical protein.
  
     0.673
AAZ70093.1
Hypothetical protein.
  
     0.671
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.