STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ72091.1Putative transmembrane efflux protein. (467 aa)    
Predicted Functional Partners:
AAZ71820.1
GufA protein.
  
 
 0.564
AAZ71200.1
Hypothetical protein.
  
 
 0.541
AAZ69648.1
Kef-type potassium/proton antiporter, CPA2 family; TC 2.A.37.1.
  
  
 0.531
AAZ70595.1
Kef-type potassium/proton antiporter, CPA2 family; TC 2.A.37.1.
  
  
 0.531
tbp
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.526
tbp-2
TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
   
  
 0.526
AAZ69740.1
Aldo/keto reductase.
  
    0.512
AAZ71743.1
ATP-dependent helicase.
   
    0.507
gap1
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.501
gap2
Glyceraldehyde-3-phosphate dehydrogenase.
  
  
 0.501
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.