STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_0259TonB-linked outer membrane receptor. (782 aa)    
Predicted Functional Partners:
CHU_0258
Hypothetical protein.
 
     0.915
CHU_3756
Conserved hypothetical protein.
 
     0.775
CHU_0263
Conserved hypothetical protein.
  
    0.560
CHU_0257
Conserved hypothetical protein; possible sulfite reductase/membrane protein.
     0.559
CHU_0262
RNA polymerase sigma factor (possible RNA polymerase sigma-24 factor); Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.527
CHU_1840
Conserved hypothetical protein.
  
     0.444
CHU_0260
Hypothetical protein.
       0.440
CHU_0419
tonB-related protein.
   
   0.417
CHU_1541
Outer membrane transport energization protein TonB; TC 2.C.1.1.1.
   
   0.417
tonB
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.417
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.