Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHU_0331 | CHU_0332 | CHU_0331 | CHU_0332 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.841 |
CHU_0331 | CHU_0334 | CHU_0331 | CHU_0334 | Conserved hypothetical protein. | Sensor histidine kinase. | 0.545 |
CHU_0331 | hemA | CHU_0331 | CHU_0333 | Conserved hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.773 |
CHU_0332 | CHU_0331 | CHU_0332 | CHU_0331 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.841 |
CHU_0332 | CHU_0334 | CHU_0332 | CHU_0334 | Conserved hypothetical protein. | Sensor histidine kinase. | 0.545 |
CHU_0332 | hemA | CHU_0332 | CHU_0333 | Conserved hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.773 |
CHU_0334 | CHU_0331 | CHU_0334 | CHU_0331 | Sensor histidine kinase. | Conserved hypothetical protein. | 0.545 |
CHU_0334 | CHU_0332 | CHU_0334 | CHU_0332 | Sensor histidine kinase. | Conserved hypothetical protein. | 0.545 |
CHU_0334 | hemA | CHU_0334 | CHU_0333 | Sensor histidine kinase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.559 |
cysG | cysG-2 | CHU_2635 | CHU_2636 | Precorrin-2 dehydrogenase. | uroporphyrinogen-III C-methyltransferase. | 0.999 |
cysG | hemA | CHU_2635 | CHU_0333 | Precorrin-2 dehydrogenase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.524 |
cysG | hemB | CHU_2635 | CHU_0646 | Precorrin-2 dehydrogenase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.597 |
cysG | hemC | CHU_2635 | CHU_0492 | Precorrin-2 dehydrogenase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.881 |
cysG | hemL-2 | CHU_2635 | CHU_0936 | Precorrin-2 dehydrogenase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.749 |
cysG-2 | cysG | CHU_2636 | CHU_2635 | uroporphyrinogen-III C-methyltransferase. | Precorrin-2 dehydrogenase. | 0.999 |
cysG-2 | hemA | CHU_2636 | CHU_0333 | uroporphyrinogen-III C-methyltransferase. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.778 |
cysG-2 | hemB | CHU_2636 | CHU_0646 | uroporphyrinogen-III C-methyltransferase. | Porphobilinogen synthase; Belongs to the ALAD family. | 0.897 |
cysG-2 | hemC | CHU_2636 | CHU_0492 | uroporphyrinogen-III C-methyltransferase. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.990 |
cysG-2 | hemE | CHU_2636 | CHU_0774 | uroporphyrinogen-III C-methyltransferase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.929 |
cysG-2 | hemL-2 | CHU_2636 | CHU_0936 | uroporphyrinogen-III C-methyltransferase. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.677 |
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