Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHU_0529 | CHU_0617 | CHU_0529 | CHU_0617 | Conserved hypothetical protein. | Outer membrane protein. | 0.548 |
CHU_0529 | CHU_0618 | CHU_0529 | CHU_0618 | Conserved hypothetical protein. | Hypothetical protein. | 0.560 |
CHU_0529 | CHU_1690 | CHU_0529 | CHU_1690 | Conserved hypothetical protein. | Hypothetical protein. | 0.648 |
CHU_0529 | CHU_2924 | CHU_0529 | CHU_2924 | Conserved hypothetical protein. | CHU large protein; uncharacterized. | 0.676 |
CHU_0529 | CHU_2925 | CHU_0529 | CHU_2925 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.614 |
CHU_0614 | CHU_0616 | CHU_0614 | CHU_0616 | Conserved hypothetical protein. | Hypothetical protein. | 0.790 |
CHU_0614 | CHU_0617 | CHU_0614 | CHU_0617 | Conserved hypothetical protein. | Outer membrane protein. | 0.628 |
CHU_0614 | CHU_0618 | CHU_0614 | CHU_0618 | Conserved hypothetical protein. | Hypothetical protein. | 0.628 |
CHU_0614 | ftsH | CHU_0614 | CHU_0613 | Conserved hypothetical protein. | Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.791 |
CHU_0614 | lpxH | CHU_0614 | CHU_0615 | Conserved hypothetical protein. | UDP-2,3-diacylglucosamine hydrolase. | 0.796 |
CHU_0614 | rsfS | CHU_0614 | CHU_0612 | Conserved hypothetical protein. | Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.713 |
CHU_0616 | CHU_0614 | CHU_0616 | CHU_0614 | Hypothetical protein. | Conserved hypothetical protein. | 0.790 |
CHU_0616 | CHU_0617 | CHU_0616 | CHU_0617 | Hypothetical protein. | Outer membrane protein. | 0.628 |
CHU_0616 | CHU_0618 | CHU_0616 | CHU_0618 | Hypothetical protein. | Hypothetical protein. | 0.628 |
CHU_0616 | ftsH | CHU_0616 | CHU_0613 | Hypothetical protein. | Membrane protease FtsH catalytic subunit; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.791 |
CHU_0616 | lpxH | CHU_0616 | CHU_0615 | Hypothetical protein. | UDP-2,3-diacylglucosamine hydrolase. | 0.796 |
CHU_0616 | rsfS | CHU_0616 | CHU_0612 | Hypothetical protein. | Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.708 |
CHU_0617 | CHU_0529 | CHU_0617 | CHU_0529 | Outer membrane protein. | Conserved hypothetical protein. | 0.548 |
CHU_0617 | CHU_0614 | CHU_0617 | CHU_0614 | Outer membrane protein. | Conserved hypothetical protein. | 0.628 |
CHU_0617 | CHU_0616 | CHU_0617 | CHU_0616 | Outer membrane protein. | Hypothetical protein. | 0.628 |
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