STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdCTranscriptional regulator. (210 aa)    
Predicted Functional Partners:
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
     
 0.613
caiA
acyl-CoA dehydrogenase.
      
 0.613
acrD
Acriflavin resistance protein D; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.612
acrA
Acriflavine resistance protein E; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.584
CHU_1075
CHU large protein; candidate b-glycosidase, glycoside hydrolase family 8 protein.
  
     0.535
CHU_3119
CHU large protein; possible phytase.
  
     0.507
CHU_0768
CHU large protein; uncharacterized.
  
     0.482
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.475
CHU_1557
CHU large protein; uncharacterized.
  
     0.452
CHU_3441
CHU large protein; b-glycosidase related, glycoside hydrolase family 8 protein.
  
     0.448
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.