STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_1596Conserved hypothetical protein. (220 aa)    
Predicted Functional Partners:
CHU_1597
Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.803
CHU_1084
Conserved hypothetical protein.
 
     0.797
CHU_1740
Hypothetical protein.
 
     0.793
CHU_2222
Conserved hypothetical protein.
 
    0.793
CHU_3499
Conserved hypothetical protein.
 
     0.787
CHU_1794
Conserved hypothetical protein.
 
     0.785
deaD
ATP-dependent RNA helicase (cold-shock DEAD-box protein A); Belongs to the DEAD box helicase family.
       0.773
CHU_3505
Conserved hypothetical protein.
  
     0.768
smt-2
SAM-dependent methyltransferase.
    
 
 0.611
CHU_2247
Conserved hypothetical protein.
  
 
 0.566
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.