STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompA-5Peptidoglycan-associated lipoprotein, OmpA family. (640 aa)    
Predicted Functional Partners:
CHU_1052
Conserved hypothetical protein.
  
 
 0.910
yiaD-5
Possible outer membrane protein.
 
 
0.838
yiaD-3
Possible outer membrane protein.
 
 
0.831
tpn50
Outer membrane protein, OmpA family.
 
 
0.821
ompA-8
Outer membrane protein, OmpA family.
  
 
 0.820
ompA-3
Outer membrane protein, OmpA family.
 
 
0.810
CHU_3655
Conserved hypothetical protein.
  
     0.721
CHU_3434
Conserved hypothetical protein.
  
     0.720
CHU_2709
PorT-related protein.
  
     0.709
CHU_2552
Conserved hypothetical protein.
 
   0.699
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.