STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_2255Conserved hypothetical protein. (507 aa)    
Predicted Functional Partners:
CHU_2254
Conserved hypothetical protein.
     0.950
CHU_1456
CHU large protein; uncharacterized.
  
  
 0.742
CHU_1860
Conserved hypothetical protein; possible cell wall protein.
     
 0.705
CHU_3230
Conserved hypothetical protein.
   
  
 0.553
CHU_2256
Possible Zn-dependent hydrolase.
       0.531
CHU_2257
Cyclic nucleotide binding regulatory protein.
       0.531
ybbK
Possible protease.
     
 0.513
CHU_3569
SPFH domain, Band 7 family protein.
     
 0.513
CHU_2259
Cyclic nucleotide binding regulatory protein.
 
     0.446
yciK
Possible oxidoreductase.
       0.413
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.