STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHU_2293Hypothetical protein. (111 aa)    
Predicted Functional Partners:
CHU_3547
Outer membrane protein.
  
     0.630
CHU_2294
Hypothetical protein.
       0.625
CHU_2295
Hypothetical protein.
       0.534
CHU_1063
Fatty-acid desaturase.
  
     0.518
CHU_2837
Bifunctional non-homologous end joining protein LigD; ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module.
 
     0.486
yhdF
Short-chain dehydrogenase/reductase, probable oxidoreductase.
       0.456
CHU_1521
Conserved hypothetical protein.
  
     0.453
rhsD
Conserved hypothetical protein with multiple RHS repeat domains.
  
     0.445
CHU_2913
Conserved hypothetical protein.
  
     0.437
CHU_3231
Outer membrane protein.
  
     0.434
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.