Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rhsDConserved hypothetical protein with multiple RHS repeat domains. (2513 aa)    
Predicted Functional Partners:
CHU_3209
Conserved hypothetical protein.
 
    0.949
CHU_1521
Conserved hypothetical protein.
 
    0.785
CHU_3208
Hypothetical protein.
       0.773
CHU_3213
Conserved hypothetical protein; possible cell wall anchor protein.
 
   0.698
CHU_2573
Conserved hypothetical protein.
  
     0.696
CHU_3206
Hypothetical protein.
       0.678
CHU_3448
Conserved hypothetical protein.
  
     0.662
CHU_3214
Conserved hypothetical protein.
 
   0.661
CHU_3210
Hypothetical protein.
       0.651
CHU_3211
Conserved hypothetical protein.
       0.651
Your Current Organism:
Cytophaga hutchinsonii
NCBI taxonomy Id: 269798
Other names: C. hutchinsonii ATCC 33406, Cytophaga hutchinsonii ATCC 33406, Cytophaga hutchinsonii str. ATCC 33406, Cytophaga hutchinsonii strain ATCC 33406
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