Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CHU_0010 | phhB | CHU_0010 | CHU_3388 | Conserved hypothetical protein. | Pterin-4-alpha-carbinolamine dehydratase. | 0.411 |
CHU_3389 | phhB | CHU_3389 | CHU_3388 | Conserved hypothetical protein. | Pterin-4-alpha-carbinolamine dehydratase. | 0.579 |
CHU_3389 | yraL | CHU_3389 | CHU_3387 | Conserved hypothetical protein. | Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.587 |
pheA | phhA | CHU_0764 | CHU_3025 | Prephenate dehydratase. | Phenylalanine 4-hydroxylase. | 0.929 |
pheA | phhB | CHU_0764 | CHU_3388 | Prephenate dehydratase. | Pterin-4-alpha-carbinolamine dehydratase. | 0.404 |
pheA | purU | CHU_0764 | CHU_3078 | Prephenate dehydratase. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.451 |
pheA | trpC | CHU_0764 | CHU_3293 | Prephenate dehydratase. | Indole-3-glycerolphosphate synthase; Belongs to the TrpC family. | 0.684 |
phhA | pheA | CHU_3025 | CHU_0764 | Phenylalanine 4-hydroxylase. | Prephenate dehydratase. | 0.929 |
phhA | phhB | CHU_3025 | CHU_3388 | Phenylalanine 4-hydroxylase. | Pterin-4-alpha-carbinolamine dehydratase. | 0.994 |
phhA | purU | CHU_3025 | CHU_3078 | Phenylalanine 4-hydroxylase. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.517 |
phhB | CHU_0010 | CHU_3388 | CHU_0010 | Pterin-4-alpha-carbinolamine dehydratase. | Conserved hypothetical protein. | 0.411 |
phhB | CHU_3389 | CHU_3388 | CHU_3389 | Pterin-4-alpha-carbinolamine dehydratase. | Conserved hypothetical protein. | 0.579 |
phhB | pheA | CHU_3388 | CHU_0764 | Pterin-4-alpha-carbinolamine dehydratase. | Prephenate dehydratase. | 0.404 |
phhB | phhA | CHU_3388 | CHU_3025 | Pterin-4-alpha-carbinolamine dehydratase. | Phenylalanine 4-hydroxylase. | 0.994 |
phhB | purU | CHU_3388 | CHU_3078 | Pterin-4-alpha-carbinolamine dehydratase. | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | 0.562 |
phhB | trpC | CHU_3388 | CHU_3293 | Pterin-4-alpha-carbinolamine dehydratase. | Indole-3-glycerolphosphate synthase; Belongs to the TrpC family. | 0.419 |
phhB | yraL | CHU_3388 | CHU_3387 | Pterin-4-alpha-carbinolamine dehydratase. | Methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.801 |
purU | pheA | CHU_3078 | CHU_0764 | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | Prephenate dehydratase. | 0.451 |
purU | phhA | CHU_3078 | CHU_3025 | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | Phenylalanine 4-hydroxylase. | 0.517 |
purU | phhB | CHU_3078 | CHU_3388 | Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). | Pterin-4-alpha-carbinolamine dehydratase. | 0.562 |
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