STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gmet_0515Membrane protein, putative. (222 aa)    
Predicted Functional Partners:
arsC
Arsenate reductase and protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
   
 0.761
mdh
Malate dehydrogenase, NAD-dependent; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.744
dsbD
Thiol:disulfide interchange protein.
     
 0.689
trx-2
Thioredoxin family protein; Belongs to the thioredoxin family.
       0.689
Gmet_0518
Redox-active disulfide protein 2.
       0.689
Gmet_0519
Membrane protein DUF318.
  
    0.638
arsB
Arsenite efflux pump.
       0.623
ideR
Iron/manganese-dependent transcriptional regulator.
 
   
 0.572
Gmet_0831
Hypothetical protein.
 
     0.567
Gmet_0522
Helix-turn-helix transcriptional regulator, ArsR family.
     
 0.559
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.