STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gmet_1234Peptide ABC transporter, periplasmic peptide-binding lipoprotein. (538 aa)    
Predicted Functional Partners:
Gmet_1235
Peptide ABC transporter, membrane protein.
 0.998
Gmet_1236
Peptide ABC transporter, membrane protein.
 0.998
Gmet_0847
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.988
Gmet_0848
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.988
por
Pyruvate:ferredoxin/flavodoxin oxidoreductase.
  
  
 0.858
Gmet_1233
TPR domain protein.
 
     0.841
Gmet_1230
Sodium/solute symporter, GAF and PP2C family protein serine/threonine phosphatase domain protein.
     
 0.660
flgF
Flagellar basal body rod protein FlgF; Belongs to the flagella basal body rod proteins family.
   
   0.582
Gmet_1238
Peptidase lipoprotein, M48 family.
  
    0.515
Gmet_1237
Hypothetical protein.
       0.495
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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