Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gmet_1663Membrane protein, AraJ family. (385 aa)    
Predicted Functional Partners:
Gmet_1375
Multidrug resistance efflux pump, RND family, membrane fusion protein EmrA.
 
 
 0.798
Gmet_1662
Antibiotic biosynthesis monooxygenase domain protein.
       0.636
Gmet_1682
Transporter, Bcr/CflA subfamily.
  
   
 0.510
Gmet_1660
Hypothetical protein.
       0.475
Gmet_1661
RES domain protein.
       0.475
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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