STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degP-1Periplasmic trypsin-like serine protease DegP; Belongs to the peptidase S1C family. (464 aa)    
Predicted Functional Partners:
Gmet_3052
Serine protease with TPR domains, putative.
  
 
0.951
degP-2
Periplasmic trypsin-like serine protease lipoprotein DegP; Belongs to the peptidase S1C family.
  
  
 
0.904
Gmet_0775
Peptidoglycan-binding outer membrane protein, OMP_b-brl, OmpA and OmpA domain-containing; Domains: OMP_b-brl, OmpA, OmpA.
   
 
 0.825
Gmet_0342
Peptidoglycan-binding outer membrane protein, OMP_b-brl and OmpA domain-containing; Domains: OMP_b-brl, OmpA.
   
 
 0.797
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.748
pepA
Cytosolic aminopeptidase, M17 family; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 0.685
Gmet_1569
Zinc-dependent isopeptidase.
   
 0.635
Gmet_2642
Sensor histidine kinase response receiver, 4HB_MCP_1 and GAF domain-containing; Domains: 4HB_MCP_1, GAF, HisKA, HATPase_c, REC, REC, REC.
  
  
 0.611
Gmet_1765
Sensor histidine kinase response regulator; Domains: HisKA, HATPase_c, REC.
  
  
 0.585
Gmet_0905
ATPase, AAA family.
    
 0.559
Your Current Organism:
Geobacter metallireducens
NCBI taxonomy Id: 269799
Other names: G. metallireducens GS-15, Geobacter metallireducens GS-15, Geobacter metallireducens str. GS-15, Geobacter metallireducens strain GS-15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.