STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_0333Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family. (162 aa)    
Predicted Functional Partners:
Tfu_0287
Protein phosphatase 2C-like, withe GAF domain.
 
 
 0.929
Tfu_1739
PAS/Protein phosphatase 2C-like.
 
 
 0.923
Tfu_2200
Protein phosphatase 2C-like.
 
 
 0.744
Tfu_0121
Conserved hypothetical protein.
 
 
 0.734
Tfu_0286
GAF sensor hybrid histidine kinase.
  
  
 0.697
Tfu_0560
Putative anti-sigma factor.
 
 
 0.657
Tfu_2083
PAS/Protein phosphatase 2C-like.
 
 
 0.647
Tfu_0704
Hypothetical protein.
 
   0.604
Tfu_0610
Diguanylate cyclase/phosphodiesterase.
  
  
 0.596
Tfu_1752
Protein phosphatase 2C-like.
 
 
 0.588
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.