Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tfu_0530 | Tfu_0671 | Tfu_0530 | Tfu_0671 | Superfamily I DNA and RNA helicases. | SMF protein. | 0.542 |
Tfu_0530 | Tfu_0825 | Tfu_0530 | Tfu_0825 | Superfamily I DNA and RNA helicases. | ComEC/Rec2-related protein. | 0.691 |
Tfu_0530 | topA | Tfu_0530 | Tfu_2784 | Superfamily I DNA and RNA helicases. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.999 |
Tfu_0610 | Tfu_0669 | Tfu_0610 | Tfu_0669 | Diguanylate cyclase/phosphodiesterase. | Conserved hypothetical protein; Belongs to the UPF0102 family. | 0.546 |
Tfu_0610 | Tfu_0671 | Tfu_0610 | Tfu_0671 | Diguanylate cyclase/phosphodiesterase. | SMF protein. | 0.506 |
Tfu_0610 | Tfu_0825 | Tfu_0610 | Tfu_0825 | Diguanylate cyclase/phosphodiesterase. | ComEC/Rec2-related protein. | 0.579 |
Tfu_0610 | Tfu_2493 | Tfu_0610 | Tfu_2493 | Diguanylate cyclase/phosphodiesterase. | Conserved hypothetical protein. | 0.739 |
Tfu_0667 | Tfu_0669 | Tfu_0667 | Tfu_0669 | Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. | Conserved hypothetical protein; Belongs to the UPF0102 family. | 0.474 |
Tfu_0667 | Tfu_0670 | Tfu_0667 | Tfu_0670 | Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. | Mg chelatase-related protein. | 0.455 |
Tfu_0667 | Tfu_0671 | Tfu_0667 | Tfu_0671 | Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. | SMF protein. | 0.534 |
Tfu_0669 | Tfu_0610 | Tfu_0669 | Tfu_0610 | Conserved hypothetical protein; Belongs to the UPF0102 family. | Diguanylate cyclase/phosphodiesterase. | 0.546 |
Tfu_0669 | Tfu_0667 | Tfu_0669 | Tfu_0667 | Conserved hypothetical protein; Belongs to the UPF0102 family. | Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. | 0.474 |
Tfu_0669 | Tfu_0670 | Tfu_0669 | Tfu_0670 | Conserved hypothetical protein; Belongs to the UPF0102 family. | Mg chelatase-related protein. | 0.952 |
Tfu_0669 | Tfu_0671 | Tfu_0669 | Tfu_0671 | Conserved hypothetical protein; Belongs to the UPF0102 family. | SMF protein. | 0.895 |
Tfu_0669 | Tfu_0825 | Tfu_0669 | Tfu_0825 | Conserved hypothetical protein; Belongs to the UPF0102 family. | ComEC/Rec2-related protein. | 0.422 |
Tfu_0670 | Tfu_0667 | Tfu_0670 | Tfu_0667 | Mg chelatase-related protein. | Signal peptidase I. Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family. | 0.455 |
Tfu_0670 | Tfu_0669 | Tfu_0670 | Tfu_0669 | Mg chelatase-related protein. | Conserved hypothetical protein; Belongs to the UPF0102 family. | 0.952 |
Tfu_0670 | Tfu_0671 | Tfu_0670 | Tfu_0671 | Mg chelatase-related protein. | SMF protein. | 0.968 |
Tfu_0670 | Tfu_0825 | Tfu_0670 | Tfu_0825 | Mg chelatase-related protein. | ComEC/Rec2-related protein. | 0.608 |
Tfu_0670 | Tfu_2493 | Tfu_0670 | Tfu_2493 | Mg chelatase-related protein. | Conserved hypothetical protein. | 0.518 |
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