STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_06904-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (448 aa)    
Predicted Functional Partners:
Tfu_0687
Methylmalonate-semialdehyde dehydrogenase (acylating).
 
 0.925
Tfu_0744
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 0.925
Tfu_1471
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.925
Tfu_1776
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.925
Tfu_2590
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 0.925
Tfu_2949
Succinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.925
Tfu_0686
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.920
panD
L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.907
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.902
Tfu_1546
Putative acyl-CoA synthetase.
   
 
 0.815
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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