STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_0826Helix-hairpin-helix DNA-binding, class 1. (355 aa)    
Predicted Functional Partners:
Tfu_0825
ComEC/Rec2-related protein.
 
  
 0.951
Tfu_0823
DNA polymerase III, delta subunit.
     
 0.698
Tfu_1089
Hypothetical protein.
   
  
 0.648
Tfu_2201
Conserved hypothetical protein.
  
    0.632
Tfu_0824
Conserved hypothetical protein.
       0.608
Tfu_2542
Cell envelope-related transcriptional attenuator.
 
     0.593
Tfu_2567
Cell envelope-related transcriptional attenuator.
 
     0.527
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
       0.494
Tfu_2956
Cell envelope-related transcriptional attenuator.
 
     0.489
Tfu_2526
Cell envelope-related transcriptional attenuator.
 
     0.469
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.