Tfu_0951 protein (Thermobifida fusca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Tfu_0951

Putative metal-binding protein. (68 aa)

Predicted Functional Partners:

Tfu_2766

0.976

Tfu_2848

0.976

Tfu_0952

0.852

Tfu_0567

0.621

Tfu_2916

0.621

rplN

0.480

Tfu_0953

0.455

ppa

0.452

Tfu_0799

0.434

Tfu_0286

0.428

Your Current Organism:

Thermobifida fusca

NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Tfu_0286	Tfu_0951	Tfu_0286	Tfu_0951	GAF sensor hybrid histidine kinase.	Putative metal-binding protein.	0.428
Tfu_0286	ppa	Tfu_0286	Tfu_2902	GAF sensor hybrid histidine kinase.	Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.	0.425
Tfu_0567	Tfu_0951	Tfu_0567	Tfu_0951	Possible regulator.	Putative metal-binding protein.	0.621
Tfu_0799	Tfu_0951	Tfu_0799	Tfu_0951	Conserved hypothetical protein; Belongs to the Dps family.	Putative metal-binding protein.	0.434
Tfu_0799	Tfu_2766	Tfu_0799	Tfu_2766	Conserved hypothetical protein; Belongs to the Dps family.	Hypothetical protein.	0.424
Tfu_0951	Tfu_0286	Tfu_0951	Tfu_0286	Putative metal-binding protein.	GAF sensor hybrid histidine kinase.	0.428
Tfu_0951	Tfu_0567	Tfu_0951	Tfu_0567	Putative metal-binding protein.	Possible regulator.	0.621
Tfu_0951	Tfu_0799	Tfu_0951	Tfu_0799	Putative metal-binding protein.	Conserved hypothetical protein; Belongs to the Dps family.	0.434
Tfu_0951	Tfu_0952	Tfu_0951	Tfu_0952	Putative metal-binding protein.	Conserved hypothetical protein.	0.852
Tfu_0951	Tfu_0953	Tfu_0951	Tfu_0953	Putative metal-binding protein.	Conserved hypothetical protein.	0.455
Tfu_0951	Tfu_2766	Tfu_0951	Tfu_2766	Putative metal-binding protein.	Hypothetical protein.	0.976
Tfu_0951	Tfu_2848	Tfu_0951	Tfu_2848	Putative metal-binding protein.	ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase.	0.976
Tfu_0951	Tfu_2916	Tfu_0951	Tfu_2916	Putative metal-binding protein.	Similar to transcriptional regulator.	0.621
Tfu_0951	ppa	Tfu_0951	Tfu_2902	Putative metal-binding protein.	Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.	0.452
Tfu_0951	rplN	Tfu_0951	Tfu_2636	Putative metal-binding protein.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.480
Tfu_0952	Tfu_0951	Tfu_0952	Tfu_0951	Conserved hypothetical protein.	Putative metal-binding protein.	0.852
Tfu_0952	Tfu_0953	Tfu_0952	Tfu_0953	Conserved hypothetical protein.	Conserved hypothetical protein.	0.526
Tfu_0952	Tfu_2848	Tfu_0952	Tfu_2848	Conserved hypothetical protein.	ATPase, E1-E2 type:Copper-translocating P-type ATPase:Heavy metal translocating P-type ATPase.	0.675
Tfu_0953	Tfu_0951	Tfu_0953	Tfu_0951	Conserved hypothetical protein.	Putative metal-binding protein.	0.455
Tfu_0953	Tfu_0952	Tfu_0953	Tfu_0952	Conserved hypothetical protein.	Conserved hypothetical protein.	0.526