STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1195Putative regulator. (780 aa)    
Predicted Functional Partners:
Tfu_0207
Putative transcriptional regulator.
  
 0.939
Tfu_2361
Tyrosine protein kinase:Serine/threonine protein kinase.
 
      0.781
Tfu_2567
Cell envelope-related transcriptional attenuator.
   
    0.704
Tfu_1336
Putative Sir2 family regulator.
   
    0.685
Tfu_2393
Regulatory protein, MarR.
  
    0.639
Tfu_1988
Transcriptional regulator.
   
    0.611
Tfu_1141
Tyrosine protein kinase:Serine/threonine protein kinase.
 
      0.597
Tfu_2389
Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.591
Tfu_0610
Diguanylate cyclase/phosphodiesterase.
   
    0.518
Tfu_0758
Regulatory protein, LuxR.
  
   
0.493
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.