Tfu_1225 protein (Thermobifida fusca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Tfu_1225

Putative cytochrome P450. (392 aa)

Predicted Functional Partners:

Tfu_1865

0.990

Tfu_1227

0.805

Tfu_1747

0.775

polA

0.773

Tfu_1223

0.726

Tfu_1226

0.698

Tfu_1224

0.688

Tfu_1229

0.688

Tfu_1220

0.678

Tfu_1228

0.678

Your Current Organism:

Thermobifida fusca

NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Tfu_1220	Tfu_1223	Tfu_1220	Tfu_1223	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative rifampin monooxygenase.	0.574
Tfu_1220	Tfu_1224	Tfu_1220	Tfu_1224	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative 3-oxoacyl-(acyl-carrier protein) reductase.	0.619
Tfu_1220	Tfu_1225	Tfu_1220	Tfu_1225	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative cytochrome P450.	0.678
Tfu_1220	Tfu_1226	Tfu_1220	Tfu_1226	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Hypothetical protein.	0.401
Tfu_1220	Tfu_1227	Tfu_1220	Tfu_1227	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative ferredoxin reductase.	0.401
Tfu_1220	Tfu_1228	Tfu_1220	Tfu_1228	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative acyl-CoA carboxylase complex A subunit.	0.893
Tfu_1220	Tfu_1229	Tfu_1220	Tfu_1229	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative 3-oxoacyl-ACP synthase III.	0.576
Tfu_1220	Tfu_1747	Tfu_1220	Tfu_1747	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Putative cytochrome P450.	0.441
Tfu_1220	Tfu_1865	Tfu_1220	Tfu_1865	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	Amino acid adenylation.	0.937
Tfu_1220	polA	Tfu_1220	Tfu_1189	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	DNA polymerase A; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.620
Tfu_1223	Tfu_1220	Tfu_1223	Tfu_1220	Putative rifampin monooxygenase.	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	0.574
Tfu_1223	Tfu_1224	Tfu_1223	Tfu_1224	Putative rifampin monooxygenase.	Putative 3-oxoacyl-(acyl-carrier protein) reductase.	0.963
Tfu_1223	Tfu_1225	Tfu_1223	Tfu_1225	Putative rifampin monooxygenase.	Putative cytochrome P450.	0.726
Tfu_1223	Tfu_1226	Tfu_1223	Tfu_1226	Putative rifampin monooxygenase.	Hypothetical protein.	0.572
Tfu_1223	Tfu_1227	Tfu_1223	Tfu_1227	Putative rifampin monooxygenase.	Putative ferredoxin reductase.	0.579
Tfu_1223	Tfu_1228	Tfu_1223	Tfu_1228	Putative rifampin monooxygenase.	Putative acyl-CoA carboxylase complex A subunit.	0.572
Tfu_1223	Tfu_1229	Tfu_1223	Tfu_1229	Putative rifampin monooxygenase.	Putative 3-oxoacyl-ACP synthase III.	0.587
Tfu_1224	Tfu_1220	Tfu_1224	Tfu_1220	Putative 3-oxoacyl-(acyl-carrier protein) reductase.	Actinorhodin polyketide synthase acyl carrier protein / 3-oxoacyl-ACP synthase acyl carrier protein.	0.619
Tfu_1224	Tfu_1223	Tfu_1224	Tfu_1223	Putative 3-oxoacyl-(acyl-carrier protein) reductase.	Putative rifampin monooxygenase.	0.963
Tfu_1224	Tfu_1225	Tfu_1224	Tfu_1225	Putative 3-oxoacyl-(acyl-carrier protein) reductase.	Putative cytochrome P450.	0.688