STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1273Putative oxidoreductase. (396 aa)    
Predicted Functional Partners:
Tfu_1274
Conserved hypothetical protein; Belongs to the cytochrome P450 family.
 
  
 0.913
Tfu_1985
Putative dioxygenase.
 
 0.831
Tfu_1275
Conserved hypothetical protein.
     
 0.777
Tfu_0895
Conserved hypothetical protein.
 
 
 0.771
Tfu_2993
Conserved hypothetical protein.
  
 
 0.701
Tfu_1257
Cytochrome P450 monooxygenase.
 
  
 0.666
Tfu_1173
Glutamate synthase (NADH) large subunit.
  
  
 0.598
Tfu_0423
Flavohemoprotein; Belongs to the globin family.
  
  
 0.595
Tfu_1272
Hypothetical protein.
       0.581
Tfu_2731
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase.
  
  
 0.513
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.