STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1290Similar to ABC-type branched-chain amino acid transport systems periplasmic component. (392 aa)    
Predicted Functional Partners:
Tfu_1186
Branched-chain amino acid transport system substrate-binding protein.
  
  
  0.954
Tfu_1292
Similar to ABC-type branched-chain amino acid transport system permease component.
 
  
 0.933
Tfu_1291
Probable amino-acid transmembrane lipoprotein ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.931
Tfu_1293
ABC-type branched-chain amino acid transport systems ATPase component.
 
  
 0.929
Tfu_1294
ABC-type branched-chain amino acid transport systems ATPase component.
 
  
 0.925
Tfu_1779
Conserved hypothetical protein.
  
  
  0.917
Tfu_0074
ABC branched-chain amino acid transporter substrate-binding protein.
  
  
 
0.915
Tfu_1780
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.864
Tfu_0077
Branched-chain amino acid ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.859
Tfu_1781
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.857
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.