STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1304Similar to ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components. (417 aa)    
Predicted Functional Partners:
Tfu_1306
ABC transporter, permease component.
 
  
 0.931
Tfu_1305
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component.
 
  
 0.921
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.706
Tfu_1505
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component.
 
  
 0.621
Tfu_1691
ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component.
 
  
 0.619
Tfu_1303
NADH:flavin oxidoreductases, Old Yellow enzyme family.
     
 0.577
Tfu_1301
Similar to Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
  
 0.555
Tfu_1503
Taurine ABC transporter, permease protein.
 
  
 0.553
Tfu_1692
Putative ABC transporter membrane protein.
 
  
 0.544
Tfu_1173
Glutamate synthase (NADH) large subunit.
   
  
 0.464
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.