STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1372Cell envelope-related transcriptional attenuator. (490 aa)    
Predicted Functional Partners:
Tfu_1369
Hypothetical protein.
 
     0.603
Tfu_1088
Conserved hypothetical protein.
  
    0.571
Tfu_2220
Putative ABC transporter.
 
    0.540
Tfu_1373
Transcriptional regulator, AsnC family.
  
    0.509
Tfu_2899
Hypothetical protein.
  
     0.487
Tfu_0641
Conserved hypothetical protein.
  
     0.480
Tfu_2219
Similar to GTPases.
  
     0.470
Tfu_1371
Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
    0.464
Tfu_1937
Hypothetical protein.
  
     0.464
Tfu_2142
Hypothetical protein.
  
     0.438
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.