STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1654Hypothetical protein. (250 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.588
Tfu_0286
GAF sensor hybrid histidine kinase.
  
 
 0.524
Tfu_2147
Band 7 protein.
 
   
 0.455
Tfu_2168
Pectate lyase.
  
     0.446
Tfu_0146
Surface protein from Gram-positive cocci, anchor region.
  
   0.436
Tfu_0244
Hypothetical protein.
  
   0.436
Tfu_0737
Hypothetical protein.
  
    0.436
Tfu_1614
Conserved hypothetical protein.
  
   0.436
Tfu_2078
Hypothetical protein.
  
   0.436
Tfu_2085
Protease inhibitor precursor; Belongs to the protease inhibitor I16 (SSI) family.
  
   0.436
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.