STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_1712Conserved hypothetical protein. (325 aa)    
Predicted Functional Partners:
Tfu_1714
Conserved hypothetical protein.
  
 0.983
Tfu_1713
Hypothetical protein.
       0.782
Tfu_1711
Transcriptional regulator, GntR family.
 
   
 0.638
Tfu_1477
TrapT family, DctM subunit, C4-dicarboxylate transport.
  
     0.624
Tfu_1715
Dihydrodipicolinate synthase.
 
     0.543
Tfu_0849
Regulatory proteins, IclR.
 
  
 0.517
Tfu_0625
Regulatory proteins, IclR.
 
  
 0.453
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.