STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2123Hypothetical protein. (751 aa)    
Predicted Functional Partners:
Tfu_2121
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.850
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
    0.708
Tfu_0224
trehalose-phosphatase:HAD-superfamily hydrolase subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.700
Tfu_2124
Conserved hypothetical protein.
  
    0.578
Tfu_0934
Putative solute binding lipoprotein.
  
     0.510
Tfu_2164
Hypothetical protein.
 
     0.487
Tfu_2122
Hypothetical protein.
       0.486
Tfu_2441
Von Willebrand factor, type A.
  
    0.470
Tfu_1158
ABC-type multidrug transport system ATPase and permease components.
 
     0.408
Tfu_2778
Helix-turn-helix motif.
  
     0.405
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.