STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2168Pectate lyase. (512 aa)    
Predicted Functional Partners:
Tfu_0153
Pectate lyase/Amb allergen.
 
  
0.931
Tfu_2990
Cellulose-binding, family II, bacterial type.
 
  
 0.775
Tfu_1268
Putative secreted cellulose-binding protein.
  
   
 0.738
Tfu_1612
Cellulose-binding, family II, bacterial type.
  
   
 0.706
Tfu_0900
Mannan endo-1,4-beta-mannosidase. Glycosyl Hydrolase family 5.
  
     0.699
Tfu_1643
Ricin B lectin:Parallel beta-helix repeat.
 
     0.695
Tfu_2008
Putative secreted glycosyl hydrolase.
  
   
 0.682
Tfu_0620
Cellobiohydrolase. Glycosyl Hydrolase family 6; Belongs to the glycosyl hydrolase family 6.
  
   
 0.675
Tfu_1708
Conserved hypothetical protein.
  
     0.672
Tfu_2009
Cellulose-binding, family II, bacterial type.
 
   
 0.672
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.