STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2314Similar to Uncharacterized conserved protein. (222 aa)    
Predicted Functional Partners:
Tfu_2312
Putative cobalt transport system permease protein.
 
 0.998
Tfu_2313
ABC-type cobalt transport system ATPase component.
 
 
 0.998
Tfu_0589
ABC-type cobalt transport system.
  
 0.942
Tfu_2553
biotin--acetyl-CoA-carboxylase ligase.
 
   
 0.682
cobB
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
  
  
 0.550
Tfu_2311
Putative secreted protein.
  
    0.547
Tfu_2883
L-aspartate oxidase / nicotinate-nucleotide pyrophosphorylase (carboxylating0; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
  
 0.476
Tfu_2315
Putative secreted protein.
       0.472
Tfu_0803
DNA recombination protein RecA precursor.
     
 0.445
Tfu_0947
Putative acetyl/propionyl CoA carboxylase alpha subunit: biotin carboxylase.
 
     0.400
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.