STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2330Hypothetical protein. (451 aa)    
Predicted Functional Partners:
Tfu_2331
Putative cholesterol esterase.
 
     0.953
Tfu_1344
Conserved hypothetical protein.
  
  
 0.730
Tfu_3047
Phosphoesterase, PA-phosphatase related.
  
     0.701
Tfu_1951
Hypothetical protein.
  
     0.662
Tfu_2107
Hypothetical protein.
  
     0.635
Tfu_1426
Hypothetical protein.
 
     0.616
Tfu_2332
Putative cholesterol oxidase.
 
     0.587
Tfu_2268
Hypothetical protein.
  
     0.565
Tfu_0488
Putative peptidase.
 
     0.564
Tfu_1997
Transcriptional regulator, TetR family.
  
     0.554
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.