STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2566Galactokinase; Belongs to the GHMP kinase family. (395 aa)    
Predicted Functional Partners:
Tfu_1083
Putative aldose-1-epimerase.
 
 0.984
Tfu_2591
UDP-galactose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.981
xylB
Xylulokinase.
 
  
 0.730
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
      
 0.724
Tfu_0373
UDP-glucose pyrophosphorylase.
     
 0.715
Tfu_1672
Putative oxidoreductase.
 
 
 0.633
Tfu_1615
Beta-galactosidase.
 
  
 0.549
Tfu_2567
Cell envelope-related transcriptional attenuator.
     
 0.516
Tfu_1705
Putative oxidoreductase.
  
 
 0.501
Tfu_1707
Putative oxidoreductase.
  
 
 0.501
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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