STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2728Putative DNA methylase. (1208 aa)    
Predicted Functional Partners:
Tfu_0709
Bacteriophage (phiC31) resistance gene pglY.
 
    0.865
Tfu_0701
Serine/threonine protein kinase.
 
     0.800
Tfu_0710
Bacteriophage (phiC31) resistance gene pglZ.
 
     0.800
Tfu_0711
Putative ATP/GTP binding protein.
 
     0.788
Tfu_0712
Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal.
 
     0.788
Tfu_0050
Conserved hypothetical protein with similarity to AbiLI: abortive phage resistance protein.
 
    0.505
Tfu_0720
Similar to Superfamily I DNA and RNA helicases and helicase subunits.
  
  
 0.434
Tfu_0062
Conserved hypothetical protein.
 
     0.432
Tfu_0693
Similar to Superfamily I DNA and RNA helicases and helicase subunits.
 
  
 0.419
Tfu_0061
Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal.
 
     0.408
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.