STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tfu_2998Conserved hypothetical protein. (255 aa)    
Predicted Functional Partners:
Tfu_0706
Helix-turn-helix motif.
 
 
 0.546
Tfu_1132
Putative mini-circle protein.
  
     0.543
Tfu_0707
Conserved hypothetical protein.
 
 
 0.469
Tfu_0071
Conserved hypothetical protein.
  
     0.465
Tfu_2999
Similar to Uncharacterized protein conserved in bacteria.
       0.453
Tfu_1052
Helix-turn-helix motif.
 
 
 0.444
Tfu_2306
Helix-turn-helix motif.
 
 
 0.440
Tfu_0263
Putative DNA-binding protein.
 
 
 0.439
Tfu_1248
Helix-turn-helix motif.
 
 
 0.437
Tfu_0264
Helix-turn-helix motif.
 
 
 0.432
Your Current Organism:
Thermobifida fusca
NCBI taxonomy Id: 269800
Other names: T. fusca YX, Thermobifida fusca YX, Thermobifida fusca str. YX, Thermobifida fusca strain YX
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.