STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpoDRNA polymerase sigma factor RpoD; KEGG: lru:HMPREF0538_21998 4.6e-92 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97. (434 aa)    
Predicted Functional Partners:
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
 
 0.999
RpoC
KEGG: gvg:HMPREF0421_21208 0. rpoC; DNA-directed RNA polymerase subunit beta prime K03046; Psort location: Cytoplasmic, score: 9.97.
  
 0.999
KXA16650.1
CarD-like protein; KEGG: apb:SAR116_1070 1.2e-15 transcriptional regulator K07736; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.999
RpoA
KEGG: gvh:HMPREF9231_0263 6.9e-169 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
 
 0.999
rpoZ
KEGG: gvg:HMPREF0421_20761 2.2e-46 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
   
 0.999
KXA15325.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.999
KXA15205.1
DNA primase; KEGG: gvh:HMPREF9231_0661 0. dnaG; DNA primase K02316.
  
 0.956
KXA16662.1
Transcription factor WhiB.
    
 
 0.930
KXA17587.1
DNA gyrase, B subunit protein; KEGG: gvg:HMPREF0421_20607 0. gyrB2; DNA topoisomerase subunit B K02470; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.922
KXA15189.1
KEGG: mct:MCR_0333 2.4e-15 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.901
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.