STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17589.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (316 aa)    
Predicted Functional Partners:
RpoD
RNA polymerase sigma factor RpoD; KEGG: lru:HMPREF0538_21998 4.6e-92 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.97.
       0.836
KXA17587.1
DNA gyrase, B subunit protein; KEGG: gvg:HMPREF0421_20607 0. gyrB2; DNA topoisomerase subunit B K02470; Psort location: Cytoplasmic, score: 9.97.
       0.698
KXA17592.1
KEGG: gvh:HMPREF9231_0948 0. kinase domain protein; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.51.
       0.678
KXA17590.1
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.565
KXA17591.1
Polyprenyl synthetase; KEGG: gvh:HMPREF9231_0947 7.4e-149 polyprenyl synthetase; K13787 geranylgeranyl diphosphate synthase, type I; Psort location: Cytoplasmic, score: 9.97.
       0.515
KXA17582.1
Transporter, major facilitator family protein; KEGG: apb:SAR116_1122 4.3e-06 tetracycline resistance protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.438
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.