STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17595.1KEGG: pen:PSEEN4477 3.8e-207 secA, azi, div; preprotein translocase subunit SecA K03070; Psort location: Cytoplasmic, score: 9.97. (922 aa)    
Predicted Functional Partners:
KXA15703.1
KEGG: apb:SAR116_2411 2.0e-82 preprotein translocase subunit SecY K03076; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.996
SecG
Preprotein translocase, SecG subunit; Psort location: CytoplasmicMembrane, score: 9.55.
   
 0.989
KXA16985.1
KEGG: suy:SA2981_1144 7.7e-87 ftsZ; Cell division protein FtsZ K03531; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.978
KXA15932.1
Membrane protein insertase, YidC/Oxa1 family; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.840
RplW
Ribosomal protein L23; KEGG: apb:SAR116_2393 3.5e-16 50S ribosomal protein L25 K02892; Psort location: Cytoplasmic, score: 9.67.
   
 
 0.824
KXA15135.1
Ribosome biogenesis GTPase Der; KEGG: bbp:BBPR_1002 5.1e-292 GTP-binding protein K03977; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.820
RpmC
Ribosomal protein L29; KEGG: apb:SAR116_2399 2.5e-06 50S ribosomal protein L29 K02904; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.819
RplB
Ribosomal protein L2; KEGG: apb:SAR116_2394 2.0e-75 50S ribosomal protein L2 K02886; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.798
KXA17596.1
KEGG: apb:SAR116_0550 0.00029 ribosomal subunit interface protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.796
RpoB
KEGG: gvg:HMPREF0421_21209 0. rpoB; DNA-directed RNA polymerase subunit beta K03043; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.781
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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