STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17566.1KEGG: gvg:HMPREF0421_21050 1.0e-87 GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50. (168 aa)    
Predicted Functional Partners:
KXA16311.1
KEGG: gvg:HMPREF0421_20320 0. cafA; Rne/Rng family ribonuclease; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.95.
       0.638
KXA16310.1
Ribosomal protein L21; KEGG: apb:SAR116_1856 4.6e-14 50S ribosomal protein L21 K02888.
       0.568
RpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 1.9e-22 50S ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67.
       0.560
KXA17565.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.498
KXA16980.1
KEGG: gvh:HMPREF9231_1036 1.1e-127 RluA family pseudouridine synthase K06180; Psort location: Cytoplasmic, score: 9.97.
       0.479
KXA16981.1
Signal peptidase II; KEGG: gvh:HMPREF9231_1037 9.1e-80 lspA; signal peptidase II K03101; Psort location: CytoplasmicMembrane, score: 10.00.
       0.479
KXA16308.1
Obg family GTPase CgtA; KEGG: bya:BANAU_2707 2.5e-84 obgE; tRNA modification GTPase mnmE K03979; Psort location: Cytoplasmic, score: 7.50.
       0.438
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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