STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA17528.1Hypothetical protein; Psort location: Extracellular, score: 8.91. (92 aa)    
Predicted Functional Partners:
KXA17527.1
Hypothetical protein.
       0.927
KXA17529.1
alanine--tRNA ligase; KEGG: gvh:HMPREF9231_0443 0. alaS; alanine--tRNA ligase K01872; Psort location: Cytoplasmic, score: 9.97.
       0.870
KXA17530.1
RNAse H domain protein, YqgF family; KEGG: gvg:HMPREF0421_21092 1.9e-72 putative Holliday junction resolvase; K07447 putative holliday junction resolvase.
       0.834
KXA17531.1
YceG family protein; KEGG: aai:AARI_17280 1.3e-46 aminodeoxychorismate lyase K07082.
       0.834
KXA17526.1
KEGG: gvh:HMPREF9231_0440 4.9e-104 phosphoglycerate mutase family protein; K15634 probable phosphoglycerate mutase; Psort location: Cytoplasmic, score: 7.50.
       0.833
RpsD
Ribosomal protein S4; KEGG: ctu:CTU_38240 1.2e-27 rpsD; 30S ribosomal protein S4 K02986; Psort location: Cytoplasmic, score: 7.50.
       0.692
Your Current Organism:
Gardnerella vaginalis
NCBI taxonomy Id: 2702
Other names: ATCC 14018, CCUG 3717, CIP 70.74, Corynebacterium vaginale, DSM 4944, G. vaginalis, Haemophilus hemolyticus vaginalis, Haemophilus vaginalis, JCM 11026, LMG 7832, LMG:7832, NCTC 10287, NCTC 10915, strain 594
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